Difference between revisions of "Using Bioarchive"

From Carl R. Woese Institute for Genomic Biology - University of Illinois Urbana-Champaign
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(Option B - Install Eon Browser)
(Option C - Install Command Line Tools)
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=Option C - Install Command Line Tools=
 
=Option C - Install Command Line Tools=
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You can download and install the command line tools for the archive on your local system by downloading the software at<a class="external free" href="https://developer.spectralogic.com/clients/" rel="nofollow" data-mce-href="https://developer.spectralogic.com/clients/">https://developer.spectralogic.com/clients/</a>​
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=Using Eon Browser=
 
=Using Eon Browser=
 
=Using Command Line Tools=
 
=Using Command Line Tools=

Revision as of 10:21, 24 February 2021

Request An Account[edit]

Change Password[edit]

Get S3 Keys[edit]

Option A - Get a Biocluster Account[edit]

The tools to access the archive are already installed on Biocluster. To get an account on Biocluster please fill out the form at https://www.igb.illinois.edu/content/biocluster-account-form

Option B - Install Eon Browser[edit]

You can download and install the Eon Browser GUI for the archive on your local system by downloading the software at https://developer.spectralogic.com/clients/

Option C - Install Command Line Tools[edit]

You can download and install the command line tools for the archive on your local system by downloading the software at<a class="external free" href="https://developer.spectralogic.com/clients/" rel="nofollow" data-mce-href="https://developer.spectralogic.com/clients/">https://developer.spectralogic.com/clients/</a>​

Using Eon Browser[edit]

Using Command Line Tools[edit]

Upload A Directory[edit]

ds3_java_cli -a S3_Access_ID -k S3_Secret_Key -b Bucket_Name -e bioarchive.igb.illinois.edu --insecure -c put_bulk -d Directory_Name

  • S3_Access_ID is the S3 access id for your account, you can get this by logging into the archive web interface
  • S3_Secret_Key is the S3 secret key for your account, you can get this by logging into the archive web interface
  • Bucket_Name is the S3 bucket you want to put your data in
  • bioarchive.igb.illinois.edu is the dns name of the archive. If you are using in biocluster, you should use 172.16.28.54 instead
  • insecure does not check the certificate of the service
  • put_bulks tells the program to upload everything inside the directory given
  • Directory_Name is the directory to upload, note this will upload everything in this directory, not the directory itself