Biocluster Applications

From Carl R. Woese Institute for Genomic Biology - University of Illinois Urbana-Champaign
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Application Installed Versions Description
OpenMPI OpenMPI/2.1.0-GCC-4.9.4-2.28 The Open MPI Project is an open source MPI-2 implementation.
ior ior/3.0.1-IGB-gcc-4.9.4 Parallel filesystem I/O benchmark
MPICH MPICH/3.0.4-GCC-4.9.4-2.28 MPICH v3.x is an open source high-performance MPI 3.0 implementation.

It does not support InfiniBand (use MVAPICH2 with InfiniBand devices).

GSL GSL/2.3-IGB-gcc-4.9.4 The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers.
The library provides a wide range of mathematical routines such as random number generators, special functions
and least-squares fitting. - Homepage: http://www.gnu.org/software/gsl/
cuDNN cuDNN/7.1.4-IGB-gcc-4.9.4-CUDA-9.0.176 The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for
   deep neural networks.
OpenBLAS OpenBLAS/0.2.19-GCC-4.9.4-2.28-LAPACK-3.7.0 OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. - Homepage: http://xianyi.github.com/OpenBLAS/
FFTW FFTW/.3.3.6-gompi-4.9.4 FFTW is a C subroutine library for computing the discrete Fourier transform (DFT)
in one or more dimensions, of arbitrary input size, and of both real and complex data. - Homepage: http://www.fftw.org
ScaLAPACK ScaLAPACK/.2.0.2-gompi-4.9.4-OpenBLAS-0.2.19-LAPACK-3.7.0 The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines
redesigned for distributed memory MIMD parallel computers. - Homepage: http://www.netlib.org/scalapack/