Biocluster Applications

Application	Installed Versions	Description
Anaconda2	4.3.1	Built to complement the rich, open source Python community,the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture. - Homepage: https://www.continuum.io/anaconda-overview
Anaconda3	5.0.1 5.1.0	Built to complement the rich, open source Python community,the Anaconda platform provides an enterprise-ready data analytics platform that empowers companies to adopt a modern open data science analytics architecture.
Bison	.3.0.4 .3.0.4-GCCcore-4.9.4	Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables. - Homepage: http://www.gnu.org/software/bison
Cython	0.27.3-IGB-gcc-4.9.4-Python-2.7.13	Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex). It makes writing C extensions for Python as easy as Python itself.
FFTW	.3.3.6-gompi-4.9.4	FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data. - Homepage: http://www.fftw.org
GSL	2.3-IGB-gcc-4.9.4	The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. - Homepage: http://www.gnu.org/software/gsl/
Java	1.8.0_121 1.8.0_152	Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. - Homepage: http://java.com/
Lua	5.1.5-IGB-gcc-4.9.4 5.3.4-IGB-gcc-4.9.4	Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.
MPICH	3.0.4-GCC-4.9.4-2.28	MPICH v3.x is an open source high-performance MPI 3.0 implementation.It does not support InfiniBand (use MVAPICH2 with InfiniBand devices).
NASM	.2.12.02-IGB-gcc-4.9.4 2.12.02-IGB-gcc-4.9.4	NASM: General-purpose x86 assembler
OCaml	4.05.0-IGB-gcc-4.9.4	OCaml is a general purpose industrial-strength programming language with an emphasis on expressiveness and safety. Developed for more than 20 years at Inria it benefits from one of the most advanced type systems and supports functional, imperative and object-oriented styles of programming.
OpenBLAS	.0.2.19-GCC-4.9.4-2.28-LAPACK-3.7.0 0.2.19-GCC-4.9.4-2.28-LAPACK-3.7.0	OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. - Homepage: http://xianyi.github.com/OpenBLAS/
OpenMPI	2.1.0-GCC-4.9.4-2.28	The Open MPI Project is an open source MPI-2 implementation.
Perl	5.24.1-IGB-gcc-4.9.4 5.24.1-IGB-gcc-4.9.4-bare 5.26.1-IGB-gcc-4.9.4-unthreaded	Larry Wall Practical Extraction and Report Language
Python	2.7.13-IGB-gcc-4.9.4 3.6.1-IGB-gcc-4.9.4	Python is a programming language that lets you work more quickly and integrate your systems more effectively.
R	2.15.3-IGB-gcc-4.9.4 3.1.2-IGB-gcc-4.9.4 3.2.5-IGB-gcc-4.9.4 3.3.3-IGB-gcc-4.9.4 3.4.1-IGB-gcc-4.9.4 3.4.2-IGB-gcc-4.9.4 3.5.0-IGB-gcc-4.9.4	R is a free software environment for statistical computing and graphics.
Ruby	2.4.2-IGB-gcc-4.9.4	Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.
ScaLAPACK	.2.0.2-gompi-4.9.4-OpenBLAS-0.2.19-LAPACK-3.7.0	The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers. - Homepage: http://www.netlib.org/scalapack/
Tcl	8.6.6-IGB-gcc-4.9.4	Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language,suitable for a very wide range of uses, including web and desktop applications, networking, administration,testing and many more. - Homepage: http://www.tcl.tk/
[Complete rewrite of the NASM assembler with BSD license - Homepage: http://www.tortall.net/projects/yasm/ Yasm]	.1.3.0-IGB-gcc-4.9.4	Yasm: Complete rewrite of the NASM assembler with BSD license - Homepage: http://www.tortall.net/projects/yasm/
byacc	20170709-IGB-gcc-4.9.4	Berkeley Yacc (byacc) is generally conceded to be the best yacc variant available.In contrast to bison, it is written to avoid dependencies upon a particular compiler.
cuDNN	5.1-IGB-gcc-4.9.4-CUDA-8.0.61 6.0-IGB-gcc-4.9.4-CUDA-8.0.61 7.0.5-IGB-gcc-4.9.4-CUDA-9.0.176 7.1.4-IGB-gcc-4.9.4-CUDA-9.0.176	The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks.
flex	.2.6.3 .2.6.3-GCCcore-4.9.4	Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text. - Homepage: http://flex.sourceforge.net/
ior	3.0.1-IGB-gcc-4.9.4	Parallel filesystem I/O benchmark
nodejs	9.9.0-IGB-gcc-4.9.4	Node.js is a platform built on Chromes JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.
numba	0.34.0-IGB-gcc-4.9.4-Python-2.7.13 0.34.0-IGB-gcc-4.9.4-Python-3.6.1	Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code.
rpy	1.0.3-IGB-gcc-4.9.4-Python-2.7.13-R-2.15.3	RPy is a very simple, yet robust, Python interface to the R Programming Language. Itcan manage all kinds of R objects and can execute arbitrary R functionsincluding the graphic functions.
rpy2	2.8.6-IGB-gcc-4.9.4-Python-2.7.13-R-3.3.3 2.9.0-IGB-gcc-4.9.4-Python-3.6.1-R-3.3.3	rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface to R from Python, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like structures and functions.