Difference between revisions of "Biocluster Applications"
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!Installed Versions | !Installed Versions | ||
!Description | !Description | ||
| + | |- | ||
| + | |[http://www.open-mpi.org/ OpenMPI] | ||
| + | |OpenMPI/2.1.0-GCC-4.9.4-2.28 | ||
| + | |The Open MPI Project is an open source MPI-2 implementation. | ||
| + | |- | ||
| + | |[https://github.com/LLNL/ior ior] | ||
| + | |ior/3.0.1-IGB-gcc-4.9.4 | ||
| + | |Parallel filesystem I/O benchmark | ||
| + | |- | ||
| + | |[http://www.mpich.org/ MPICH] | ||
| + | |MPICH/3.0.4-GCC-4.9.4-2.28 | ||
| + | |MPICH v3.x is an open source high-performance MPI 3.0 implementation. | ||
| + | It does not support InfiniBand (use MVAPICH2 with InfiniBand devices). | ||
| + | |- | ||
| + | |[http://www.gnu.org/software/gsl/ GSL] | ||
| + | |GSL/2.3-IGB-gcc-4.9.4 | ||
| + | |The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. | ||
| + | The library provides a wide range of mathematical routines such as random number generators, special functions | ||
| + | and least-squares fitting. - Homepage: http://www.gnu.org/software/gsl/ | ||
| + | |- | ||
| + | |[https://developer.nvidia.com/cudnn cuDNN] | ||
| + | |cuDNN/7.1.4-IGB-gcc-4.9.4-CUDA-9.0.176 | ||
| + | |The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for | ||
| + | deep neural networks. | ||
| + | |- | ||
| + | |[http://xianyi.github.com/OpenBLAS/ OpenBLAS] | ||
| + | |OpenBLAS/0.2.19-GCC-4.9.4-2.28-LAPACK-3.7.0 | ||
| + | |OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. - Homepage: http://xianyi.github.com/OpenBLAS/ | ||
| + | |- | ||
| + | |[http://www.fftw.org FFTW] | ||
| + | |FFTW/.3.3.6-gompi-4.9.4 | ||
| + | |FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) | ||
| + | in one or more dimensions, of arbitrary input size, and of both real and complex data. - Homepage: http://www.fftw.org | ||
| + | |- | ||
| + | |[http://www.netlib.org/scalapack/ ScaLAPACK] | ||
| + | |ScaLAPACK/.2.0.2-gompi-4.9.4-OpenBLAS-0.2.19-LAPACK-3.7.0 | ||
| + | |The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines | ||
| + | redesigned for distributed memory MIMD parallel computers. - Homepage: http://www.netlib.org/scalapack/ | ||
|} | |} | ||
Revision as of 09:30, 14 September 2018
| Application | Installed Versions | Description |
|---|---|---|
| OpenMPI | OpenMPI/2.1.0-GCC-4.9.4-2.28 | The Open MPI Project is an open source MPI-2 implementation. |
| ior | ior/3.0.1-IGB-gcc-4.9.4 | Parallel filesystem I/O benchmark |
| MPICH | MPICH/3.0.4-GCC-4.9.4-2.28 | MPICH v3.x is an open source high-performance MPI 3.0 implementation.
It does not support InfiniBand (use MVAPICH2 with InfiniBand devices). |
| GSL | GSL/2.3-IGB-gcc-4.9.4 | The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers.
The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting. - Homepage: http://www.gnu.org/software/gsl/ |
| cuDNN | cuDNN/7.1.4-IGB-gcc-4.9.4-CUDA-9.0.176 | The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for
deep neural networks. |
| OpenBLAS | OpenBLAS/0.2.19-GCC-4.9.4-2.28-LAPACK-3.7.0 | OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. - Homepage: http://xianyi.github.com/OpenBLAS/ |
| FFTW | FFTW/.3.3.6-gompi-4.9.4 | FFTW is a C subroutine library for computing the discrete Fourier transform (DFT)
in one or more dimensions, of arbitrary input size, and of both real and complex data. - Homepage: http://www.fftw.org |
| ScaLAPACK | ScaLAPACK/.2.0.2-gompi-4.9.4-OpenBLAS-0.2.19-LAPACK-3.7.0 | The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines
redesigned for distributed memory MIMD parallel computers. - Homepage: http://www.netlib.org/scalapack/ |
