Jupyter[edit]

There is an installation of Jupyter which is accessible at https://bioapps3.igb.illinois.edu/jupyter

Custom Conda Environment[edit]

NOTE This must be done from the biologin nodes. It will fail on the compute nodes as they do not have access to the internet
From Regular Command Line using SSH
Load Anaconda Module

module load Anaconda3

conda create --name testenv -p $HOME/testenv

conda activate $HOME/testenv

conda install ipykernel

Install custom ipykernel module. This will install the kernel file into $HOME/.local/share/jupyter/kernels. This can be seen by jupyterhub

ipython kernel install --user --name='testenv'

Open Jupyterhub at https://bioapps3.igb.illinois.edu/jupyter and start a server.
Your testenv kernel should be listed in the list of kernels