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| 454
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2.6
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| 454
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2.7
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| 454
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2.8
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| AbundantOTU+
|
0.91b
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| abyss
|
1.2.5
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| abyss
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1.3.3
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| abyss
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1.3.4
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| afni
|
2011_12_21_2014
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| allpathslg
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42911
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| amos
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3.1.0
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| AmpliconNoise
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1.2.7
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| art
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20110922
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| artemis
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14.0
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| augustus
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2.6.1
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| b2g4pipe
|
2.5
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| babraham
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bioinformatics
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| bali-phy
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2.1.1
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| bam2fastq
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1.1.0
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| bamtools
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0.9.0
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| bcbio-nextgen
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0.6.5
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| bedtools
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2.10.0
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| bedtools
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2.10.1
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| bedtools
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2.17.0
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| biodatabase
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1.0
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| biopieces
|
0.48
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| blast+
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2.2.25+
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| blast+
|
2.2.28+
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| blast-intel
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2.2.26
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| blast
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2.2.25
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| blast
|
2.2.26
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| blast2go
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2.5
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| blat
|
0.34
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| boost-intel
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1.54
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| boost
|
1.54
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| bowtie
|
0.12.8
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| bowtie
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0.12.9
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| bowtie
|
1.0.0
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| bowtie2
|
2.0.0-beta6
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| bowtie2
|
2.0.2
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| bowtie2
|
2.0.5
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| bowtie2
|
2.1.0
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| breseq
|
0.24
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| bwa
|
0.5.9
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| bwa
|
0.7.5a
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| cafe
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2.2
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| cafe
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3.0
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| casava
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1.8.2
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| cd-hit
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4.6
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| cd-hit
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4.6.1
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| cdbfasta
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0.99
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| cegma
|
v2.4.010312
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| chance
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1.0
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| chimera
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1.5.3
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| chimera
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1.6.2
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| cisgenome
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2.0
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| ClonalFrame
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1.2
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| clustalo
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1.2.0
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| clustalw
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2.1
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| cufflinks
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1.1.0
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| cufflinks
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1.3.0
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| cufflinks
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2.0.2
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| cufflinks
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2.1.1
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| cutadapt
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1.2
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| cytoscape
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2.8.1
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| cytoscape
|
2.8.3
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| EagleView
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2.2
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| efiest
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alpha
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| efiest
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devel
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| EMBOSS
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6.5.7
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| erange
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3.2.1
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| estscan
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3.0.3
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| fasta
|
36.3.5d
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| fasta_splitter
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1
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| fastqc
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0.10.1
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| fastsimcoal2
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1.1.1
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| fasttree
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2.1.7
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| fastx_toolkit
|
0.0.13
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| findpeaks
|
3.1.9.2
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| freebayes
|
0.9.6
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| gatk
|
1.6-5
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| gatk
|
1.6-13
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| gatk
|
2.5-2
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| gatk
|
2.6-4
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| gcc
|
4.8.1
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| geneid
|
1.0
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| genomer
|
0.0.10
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| genometools
|
1.5.1
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| gff
|
2.1
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| glimmer
|
3.02
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| gmap
|
2011-09-14
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| gmap
|
2013-03-31
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| gmes
|
v2.3e
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| gnuplot
|
4.6.3
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| graphviz
|
2.32.0
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| gsl
|
1.16
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| hmmer-mpi
|
2.32-MPI-0.92
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| hmmer
|
2.3.2
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| hmmer
|
3.0
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| htseq
|
0.5.4
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| icc
|
2013.5.192
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| idba-ud
|
1.1.0
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| IGV
|
2.1.24
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| IGVTools
|
2.1.24
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| IMAGE
|
2.33
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| ImageMagick
|
6.7.8-9
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| infernal
|
1.1rc1
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| infernal
|
1.1rc2
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| inparanoid
|
4.1
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| iprscan
|
4.8
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| iprscan
|
5.44
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| iprscan
|
5.45
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| java
|
1.6.0_41
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| java
|
1.7.0_06-i386
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| java
|
1.7.0_07
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| jellyfish
|
1.1.6
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| jellyfish
|
1.1.11
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| khmer
|
2013-05-06
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| kmergenie
|
1.5854
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| krona
|
2.2
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| lamarc
|
2.1.8
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| last
|
278
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| lastz
|
1.02.00
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| libstree
|
0.4.2
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| LR-TRIRLS
|
20060531
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| lua
|
5.1.4
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| lua
|
5.2.2
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| MACS
|
1.4.2
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| MACS
|
2.0.10
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| mafft
|
6.953
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| matlab-runtime
|
r2012b
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| matlab
|
7.11.0.584
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| mcl
|
12-068
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| MEGAN
|
4.70.4
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| MEGAN
|
5.1.0
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| meme
|
4.9.0
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| MetaGeneMark
|
2010
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| metAMOS
|
1.2
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| MetaVelvet
|
1.2.02
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| MetaVelvet
|
1.2.02-kmer245
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| mfinder
|
1.2
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| mira
|
3.2.1
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| MOCAT
|
1.1
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| ModalClust
|
0.2
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| ModalClust
|
0.3
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| module-cvs
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|
| module-info
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| modules
|
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| mothur
|
1.8
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| mothur
|
1.28.0
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| mothur
|
1.31.2
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| mothur
|
1.32.0
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| mothur
|
1.32.1
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| mpich
|
3.0.4
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| mpich2
|
1.4.1p1
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| mpich2
|
1.5
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| msort
|
1.0
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| MUMmer
|
3.23
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| muscle
|
3.8.31
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| novocraft
|
2.08
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| novocraft
|
2.08.02
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| novocraft
|
2.08.03
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| novocraft
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3.00.01
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| novocraft
|
3.00.02
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| novocraft
|
3.00.05
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| novocraft
|
3.02
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| oasas-kmer245
|
0.2.8
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| oasas
|
0.2.8
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| OLB
|
1.9.4
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| openmpi-intel
|
1.6.3
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| openmpi
|
1.4.3
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| openmpi
|
1.6.3
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| orthomcl
|
2.0.2
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| orthomcl
|
2.0.7
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| paml
|
4.4
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| parallel
|
20121122
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| pathway-tools
|
16.5
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| PBJelly
|
12.9.14
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| peaksplitter
|
1.0
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| perfsuite
|
1.0.0
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| perl
|
5.16.1
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| pfamscan
|
1.0
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| phred
|
0.020425.c
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| phylip
|
3.69
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| phymmbl
|
4.0
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| picard-tools
|
1.34
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| picard-tools
|
1.73
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| picard-tools
|
1.90
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| polyphen
|
2.2.2
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| pplacer
|
1.0
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| pplacer
|
1.1
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| prank
|
121002
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| prodigal
|
2.0
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| prodigal
|
2.2
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| python
|
2.6.6
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| python
|
2.7.3(default)
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| python
|
2.7.3-sqlite
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| python
|
2.7.5-galaxy
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| python
|
3.2.3
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| qiime
|
1.3.0
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| qiime
|
1.5.0
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| qiime
|
1.6.0
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| qiime
|
1.7.0
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| quake
|
0.3.4
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| quast
|
2.2
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| quest
|
alpha
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| quest
|
devel
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| R
|
2.15.0
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| R
|
2.15.1
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| R
|
2.15.2
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| R
|
3.0.0(default)
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| R
|
3.0.2
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| RAxML
|
7.3.0
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| ray
|
2.20
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| ray
|
2.30
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| rdp_classifier
|
2.5
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| rdxplorer
|
3.2
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| repeatmasker
|
3.28
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| rockhopper
|
1.2
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| rsa-tools
|
2012-10-09
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| rstudio
|
0.97.312
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| ruby
|
1.9.3
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| samtools
|
0.1.16
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| samtools
|
0.1.18
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| samtools
|
0.1.19
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| sam_comp
|
0.7
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| SICER
|
1.1
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| signalp
|
4.1
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| smrtanalysis
|
1.4.0
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| smrtanalysis
|
2.0.1
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| SnpEff
|
3.2
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| SnpEff
|
3.3e
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| SOAP2
|
2.2
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| SOAPdenovo-Trans
|
1.02
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| SOAPdenovo
|
2.04
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| SOAPdenovo2
|
r240
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| SOAPec
|
2.01
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| SOAPec
|
2.02
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| SOAPErrorCorrection
|
0.04
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| SOAPGapCloser
|
1.12
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| SOAPprepare
|
0.1
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| speciateit
|
184(default)
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| speciateit
|
template
|
| speciatetest
|
184
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| speciate_it
|
184(default)
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| sratoolkit
|
2.1.16
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| srna-tools
|
20130118
|
| ssaha2
|
2.5.5
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| stacks
|
0.9996
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| stacks
|
0.99994
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| structure
|
2.3.4
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| subread
|
3.1.6
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| supfam
|
1.75
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| tabix
|
0.2.6
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| tcoffee
|
10-r1613
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| template
|
|
| tmhmm
|
2.0
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| tophat
|
1.4.1
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| tophat2
|
2.0.4
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| tophat2
|
2.0.5
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| tophat2
|
2.0.6
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| tophat2
|
2.0.7
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| tophat2
|
2.0.8
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| tophat2
|
2.0.10(default)
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| treemix
|
1.12
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| trf
|
4.04
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| trimmomatic
|
0.22
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| trimmomatic
|
0.27
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| trimmomatic
|
0.30
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| trinityrnaseq-intel
|
r2013-02-25
|
| trinityrnaseq
|
r2012-06-08
|
| trinityrnaseq
|
r2013-02-25
|
| trinityrnaseq
|
r2013-08-14
|
| trinotate
|
trinotate_r20130826
|
| truesight
|
0.06
|
| uchime
|
4.2.40
|
| usearch
|
6.0.307
|
| usearch
|
6.1.544
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| usearch
|
7.0.959
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| USeq
|
8.5.1
|
| vcftools
|
0.1.7
|
| vcftools
|
0.1.11
|
| velvet-kmer245
|
1.2.10
|
| velvet
|
1.1.04
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| velvet
|
1.2.08
|
| velvet
|
1.2.10
|
| velvetOptimiser
|
2.2.5
|
| version
|
|
| wessim
|
1.0
|
| wgs
|
7.0
|
| wise
|
2.2.3-rc7
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