Biocluster Mirrors
Revision as of 12:11, 9 December 2020 by Mediawikiapi (talk | contribs)
| Application | Installed Versions | Description |
|---|---|---|
| card-prevalence | 3.0.6 | November 2019 release - 85 pathogens, 116914 resistomes, and 182532 AMR allele sequences based on sequence data acquired from NCBI on July 31, 2019, analyzed using RGI 5.0.0 (DIAMOND homolog detection) and CARD 3.0.7. Includes pre-compiled k-mer classifier data for pathogen-of-origin prediction. |
| chocophlan | 0.1.1 | |
| clusterblast | 20170105 | |
| ena | Release_130 | The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. |
| gatkbundle | 20191118 | he GATK resource bundle is a collection of standard files for working with human resequencing data with the GATK. We provide several versions of the bundle corresponding to the various reference builds, |
| genbank | 238 | GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences |
| interpro | 68.0 | InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites. |
| ncbi-blastdb | 20170702 20180404 20190320 20190808 |
|
| pfam | 32.0 | The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs) |
| uniprot | 2018_04 | The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information. |
