Difference between revisions of "Biocluster Applications"
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| − | + | {| style='width: 900px; margin: 0 auto' class='wikitable' border='1' cellpadding='1' cellspacing='1'|-||home|-|454|2.6|-|454|2.7|-|454|2.8|-|AbundantOTU+|0.91b|-|abyss|1.2.5|-|abyss|1.3.3|-|abyss|1.3.4|-|afni|2011_12_21_2014|-|allpathslg|42911|-|amos|3.1.0|-|AmpliconNoise|1.2.7|-|art|20110922|-|artemis|14.0|-|augustus|2.6.1|-|b2g4pipe|2.5|-|babraham|bioinformatics|-|bali-phy|2.1.1|-|bam2fastq|1.1.0|-|bamtools|0.9.0|-|bcbio-nextgen|0.6.5|-|bedtools|2.10.0|-|bedtools|2.10.1|-|bedtools|2.17.0|-|biodatabase|1.0|-|biopieces|0.48|-|blast+|2.2.25+|-|blast+|2.2.28+|-|blast-intel|2.2.26|-|blast|2.2.25|-|blast|2.2.26|-|blast2go|2.5|-|blat|0.34|-|boost-intel|1.54|-|boost|1.54|-|bowtie|0.12.8|-|bowtie|0.12.9|-|bowtie|1.0.0|-|bowtie2|2.0.0-beta6|-|bowtie2|2.0.2|-|bowtie2|2.0.5|-|bowtie2|2.1.0|-|breseq|0.24|-|bwa|0.5.9|-|bwa|0.7.5a|-|cafe|2.2|-|cafe|3.0|-|casava|1.8.2|-|cd-hit|4.6|-|cd-hit|4.6.1|-|cdbfasta|0.99|-|cegma|v2.4.010312|-|chance|1.0|-|chimera|1.5.3|-|chimera|1.6.2|-|cisgenome|2.0|-|ClonalFrame|1.2|-|clustalo|1.2.0|-|clustalw|2.1|-|cufflinks|1.1.0|-|cufflinks|1.3.0|-|cufflinks|2.0.2|-|cufflinks|2.1.1|-|cutadapt|1.2|-|cytoscape|2.8.1|-|cytoscape|2.8.3|-|EagleView|2.2|-|efiest|alpha|-|efiest|devel|-|EMBOSS|6.5.7|-|erange|3.2.1|-|estscan|3.0.3|-|fasta|36.3.5d|-|fasta_splitter|1|-|fastqc|0.10.1|-|fastsimcoal2|1.1.1|-|fasttree|2.1.7|-|fastx_toolkit|0.0.13|-|findpeaks|3.1.9.2|-|freebayes|0.9.6|-|gatk|1.6-5|-|gatk|1.6-13|-|gatk|2.5-2|-|gatk|2.6-4|-|gcc|4.8.1|-|geneid|1.0|-|genomer|0.0.10|-|genometools|1.5.1|-|gff|2.1|-|glimmer|3.02|-|gmap|2011-09-14|-|gmap|2013-03-31|-|gmes|v2.3e|-|gnuplot|4.6.3|-|graphviz|2.32.0|-|gsl|1.16|-|hmmer-mpi|2.32-MPI-0.92|-|hmmer|2.3.2|-|hmmer|3.0|-|htseq|0.5.4|-|icc|2013.5.192|-|idba-ud|1.1.0|-|IGV|2.1.24|-|IGVTools|2.1.24|-|IMAGE|2.33|-|ImageMagick|6.7.8-9|-|infernal|1.1rc1|-|infernal|1.1rc2|-|inparanoid|4.1|-|iprscan|4.8|-|iprscan|5.44|-|iprscan|5.45|-|java|1.6.0_41|-|java|1.7.0_06-i386|-|java|1.7.0_07|-|jellyfish|1.1.6|-|jellyfish|1.1.11|-|khmer|2013-05-06|-|kmergenie|1.5854|-|krona|2.2|-|lamarc|2.1.8|-|last|278|-|lastz|1.02.00|-|libstree|0.4.2|-|LR-TRIRLS|20060531|-|lua|5.1.4|-|lua|5.2.2|-|MACS|1.4.2|-|MACS|2.0.10|-|mafft|6.953|-|matlab-runtime|r2012b|-|matlab|7.11.0.584|-|mcl|12-068|-|MEGAN|4.70.4|-|MEGAN|5.1.0|-|meme|4.9.0|-|MetaGeneMark|2010|-|metAMOS|1.2|-|MetaVelvet|1.2.02|-|MetaVelvet|1.2.02-kmer245|-|mfinder|1.2|-|mira|3.2.1|-|MOCAT|1.1|-|ModalClust|0.2|-|ModalClust|0.3|-|module-cvs||-|module-info||-|modules||-|mothur|1.8|-|mothur|1.28.0|-|mothur|1.31.2|-|mothur|1.32.0|-|mothur|1.32.1|-|mpich|3.0.4|-|mpich2|1.4.1p1|-|mpich2|1.5|-|msort|1.0|-|MUMmer|3.23|-|muscle|3.8.31|-|novocraft|2.08|-|novocraft|2.08.02|-|novocraft|2.08.03|-|novocraft|3.00.01|-|novocraft|3.00.02|-|novocraft|3.00.05|-|novocraft|3.02|-|oasas-kmer245|0.2.8|-|oasas|0.2.8|-|OLB|1.9.4|-|openmpi-intel|1.6.3|-|openmpi|1.4.3|-|openmpi|1.6.3|-|orthomcl|2.0.2|-|orthomcl|2.0.7|-|paml|4.4|-|parallel|20121122|-|pathway-tools|16.5|-|PBJelly|12.9.14|-|peaksplitter|1.0|-|perfsuite|1.0.0|-|perl|5.16.1|-|pfamscan|1.0|-|phred|0.020425.c|-|phylip|3.69|-|phymmbl|4.0|-|picard-tools|1.34|-|picard-tools|1.73|-|picard-tools|1.90|-|polyphen|2.2.2|-|pplacer|1.0|-|pplacer|1.1|-|prank|121002|-|prodigal|2.0|-|prodigal|2.2|-|python|2.6.6|-|python|2.7.3(default)|-|python|2.7.3-sqlite|-|python|2.7.5-galaxy|-|python|3.2.3|-|qiime|1.3.0|-|qiime|1.5.0|-|qiime|1.6.0|-|qiime|1.7.0|-|quake|0.3.4|-|quast|2.2|-|quest|alpha|-|quest|devel|-|R|2.15.0|-|R|2.15.1|-|R|2.15.2|-|R|3.0.0(default)|-|R|3.0.2|-|RAxML|7.3.0|-|ray|2.20|-|ray|2.30|-|rdp_classifier|2.5|-|rdxplorer|3.2|-|repeatmasker|3.28|-|rockhopper|1.2|-|rsa-tools|2012-10-09|-|rstudio|0.97.312|-|ruby|1.9.3|-|samtools|0.1.16|-|samtools|0.1.18|-|samtools|0.1.19|-|sam_comp|0.7|-|SICER|1.1|-|signalp|4.1|-|smrtanalysis|1.4.0|-|smrtanalysis|2.0.1|-|SnpEff|3.2|-|SnpEff|3.3e|-|SOAP2|2.2|-|SOAPdenovo-Trans|1.02|-|SOAPdenovo|2.04|-|SOAPdenovo2|r240|-|SOAPec|2.01|-|SOAPec|2.02|-|SOAPErrorCorrection|0.04|-|SOAPGapCloser|1.12|-|SOAPprepare|0.1|-|speciateit|184(default)|-|speciateit|template|-|speciatetest|184|-|speciate_it|184(default)|-|sratoolkit|2.1.16|-|srna-tools|20130118|-|ssaha2|2.5.5|-|stacks|0.9996|-|stacks|0.99994|-|structure|2.3.4|-|subread|3.1.6|-|supfam|1.75|-|tabix|0.2.6|-|tcoffee|10-r1613|-|template||-|tmhmm|2.0|-|tophat|1.4.1|-|tophat2|2.0.4|-|tophat2|2.0.5|-|tophat2|2.0.6|-|tophat2|2.0.7|-|tophat2|2.0.8|-|tophat2|2.0.10(default)|-|treemix|1.12|-|trf|4.04|-|trimmomatic|0.22|-|trimmomatic|0.27|-|trimmomatic|0.30|-|trinityrnaseq-intel|r2013-02-25|-|trinityrnaseq|r2012-06-08|-|trinityrnaseq|r2013-02-25|-|trinityrnaseq|r2013-08-14|-|trinotate|trinotate_r20130826|-|truesight|0.06|-|uchime|4.2.40|-|usearch|6.0.307|-|usearch|6.1.544|-|usearch|7.0.959|-|USeq|8.5.1|-|vcftools|0.1.7|-|vcftools|0.1.11|-|velvet-kmer245|1.2.10|-|velvet|1.1.04|-|velvet|1.2.08|-|velvet|1.2.10|-|velvetOptimiser|2.2.5|-|version||-|wessim|1.0|-|wgs|7.0|-|wise|2.2.3-rc7|} | |
