Difference between revisions of "Biocluster Jupyter"
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(→Custom Conda Environment) |
(→Custom Conda Environment) |
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= Custom Conda Environment = | = Custom Conda Environment = | ||
| − | * From Regular Command Line | + | * '''NOTE''' This must be done from the biologin nodes. It will fail on the compute nodes as they do not have access to the internet |
| + | * From Regular Command Line using SSH | ||
* Load Anaconda Module | * Load Anaconda Module | ||
<pre> | <pre> | ||
Revision as of 10:28, 19 August 2024
Jupyter[edit]
- There is an installation of Jupyter which is accessible at https://bioapps3.igb.illinois.edu/jupyter
Custom Conda Environment[edit]
- NOTE This must be done from the biologin nodes. It will fail on the compute nodes as they do not have access to the internet
- From Regular Command Line using SSH
- Load Anaconda Module
module load Anaconda3
- Create Conda Environment
conda create --name testenv -p $HOME/testenv
- Activate Conda Environment
conda activate $HOME/testenv
- Install ipython conda package
conda install ipykernel
- Install custom ipykernel module. This will install the kernel file into $HOME/.local/share/jupyter/kernels. This can be seen by jupyterhub
ipython kernel install --user --name='testenv'
- Open Jupyterhub at https://bioapps3.igb.illinois.edu/jupyter and start a server.
- Your testenv kernel should be listed in the list of kernels
