Biocluster Jupyter: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
|||
| Line 27: | Line 27: | ||
* Open Jupyterhub at [https://bioapps.igb.illinois.edu/jupyter https://bioapps.igb.illinois.edu/jupyter] and start a server. | * Open Jupyterhub at [https://bioapps.igb.illinois.edu/jupyter https://bioapps.igb.illinois.edu/jupyter] and start a server. | ||
* Your '''testenv''' kernel should be listed in the list of kernels | * Your '''testenv''' kernel should be listed in the list of kernels | ||
= References = | |||
Revision as of 17:26, 9 March 2022
Jupyter
- There is an installation of Jupyter which is accessible at https://bioapps.igb.illinois.edu/jupyter
Custom Conda Environment
- From Regular Command Line
- Load Anaconda Module
module load Anaconda3
- Create Conda Environment
conda create --name testenv -p $HOME/testenv
- Activate Conda Environment
conda activate $HOME/testenv
- Install ipython conda package
conda install ipykernel
- Install custom ipykernel module. This will install the kernel file into $HOME/.local/share/jupyter/kernels. This can be seen by jupyterhub
ipython kernel install --user --name='testenv'
- Open Jupyterhub at https://bioapps.igb.illinois.edu/jupyter and start a server.
- Your testenv kernel should be listed in the list of kernels