Difference between revisions of "Biocluster Mirrors"
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!Installed Versions | !Installed Versions | ||
!Description | !Description | ||
| + | |- | ||
| + | |[https://github.com/deepmind/alphafold/ alphafold-db] | ||
| + | |20210917 | ||
| + | |Alphafold Databases | ||
|- | |- | ||
|[https://card.mcmaster.ca card-prevalence] | |[https://card.mcmaster.ca card-prevalence] | ||
| Line 34: | Line 38: | ||
|- | |- | ||
|[ftp://ftp.ncbi.nlm.nih.gov/blast/db/ ncbi-blastdb] | |[ftp://ftp.ncbi.nlm.nih.gov/blast/db/ ncbi-blastdb] | ||
| − | |20170702<br>20180404<br>20190320<br>20190808 | + | |20170702<br>20180404<br>20190320<br>20190808<br>20201212 |
| − | | | + | |BLAST search pages under the Basic BLAST section of the NCBI BLAST home page(http://blast.ncbi.nlm.nih.gov/) use a standard set of BLAST databases for nucleotide, protein, and translated BLAST searches. |
|- | |- | ||
|[https://pfam.xfam.org/ pfam] | |[https://pfam.xfam.org/ pfam] | ||
| Line 42: | Line 46: | ||
|- | |- | ||
|[https://www.uniprot.org/ uniprot] | |[https://www.uniprot.org/ uniprot] | ||
| − | |2018_04 | + | |2018_04<br>2020_06 |
|The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information. | |The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information. | ||
|} | |} | ||
Revision as of 16:46, 16 September 2021
| Application | Installed Versions | Description |
|---|---|---|
| alphafold-db | 20210917 | Alphafold Databases |
| card-prevalence | 3.0.6 | November 2019 release - 85 pathogens, 116914 resistomes, and 182532 AMR allele sequences based on sequence data acquired from NCBI on July 31, 2019, analyzed using RGI 5.0.0 (DIAMOND homolog detection) and CARD 3.0.7. Includes pre-compiled k-mer classifier data for pathogen-of-origin prediction. |
| chocophlan | 0.1.1 | |
| clusterblast | 20170105 | |
| ena | Release_130 | The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. |
| gatkbundle | 20191118 | he GATK resource bundle is a collection of standard files for working with human resequencing data with the GATK. We provide several versions of the bundle corresponding to the various reference builds, |
| genbank | 238 | GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences |
| interpro | 68.0 | InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites. |
| ncbi-blastdb | 20170702 20180404 20190320 20190808 20201212 |
BLAST search pages under the Basic BLAST section of the NCBI BLAST home page(http://blast.ncbi.nlm.nih.gov/) use a standard set of BLAST databases for nucleotide, protein, and translated BLAST searches. |
| pfam | 32.0 | The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs) |
| uniprot | 2018_04 2020_06 |
The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information. |
