Difference between revisions of "Biocluster Applications"
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!Version | !Version | ||
|- | |- | ||
− | | | + | |454 |
− | | | + | |2.6, 2.7, 2.8 |
|- | |- | ||
− | | | + | |AbundantOTU+ |
− | |0. | + | |0.91b |
|- | |- | ||
− | | | + | |abyss |
− | | | + | |1.2.5, 1.3.3, 1.3.4 |
|- | |- | ||
− | | | + | |afni |
− | | | + | |2011_12_21_2014 |
|- | |- | ||
− | | | + | |allpathslg |
− | | | + | |42911 |
|- | |- | ||
− | | | + | |amos |
− | | | + | |3.1.0 |
|- | |- | ||
− | | | + | |AmpliconNoise |
− | | | + | |1.2.7 |
|- | |- | ||
− | | | + | |art |
− | | | + | |20110922 |
|- | |- | ||
− | | | + | |artemis |
− | |0 | + | |14.0 |
|- | |- | ||
− | | | + | |augustus |
− | | | + | |2.6.1 |
|- | |- | ||
− | | | + | |b2g4pipe |
− | | | + | |2.5 |
|- | |- | ||
− | | | + | |babraham |
− | | | + | |bioinformatics |
|- | |- | ||
− | | | + | |bali-phy |
− | | | + | |2.1.1 |
|- | |- | ||
− | | | + | |bam2fastq |
− | | | + | |1.1.0 |
|- | |- | ||
− | | | + | |bamtools |
− | |0. | + | |0.9.0 |
|- | |- | ||
− | | | + | |bcbio-nextgen |
− | |0. | + | |0.6.5 |
|- | |- | ||
− | | | + | |bedtools |
− | |0. | + | |2.10.0, 2.10.1, 2.17.0 |
|- | |- | ||
− | | | + | |biodatabase |
− | |0 | + | |1.0 |
|- | |- | ||
− | | | + | |biopieces |
− | |0. | + | |0.48 |
|- | |- | ||
− | | | + | |blast+ |
− | | | + | |2.2.25+, 2.2.28+ |
|- | |- | ||
− | | | + | |blast-intel |
− | | | + | |2.2.26 |
|- | |- | ||
− | | | + | |blast |
− | | | + | |2.2.25, 2.2.26 |
|- | |- | ||
− | | | + | |blast2go |
− | | | + | |2.5 |
|- | |- | ||
− | | | + | |blat |
− | |0. | + | |0.34 |
|- | |- | ||
− | | | + | |boost-intel |
− | | | + | |1.54 |
|- | |- | ||
− | | | + | |boost |
− | | | + | |1.54 |
|- | |- | ||
− | | | + | |bowtie |
− | |0. | + | |0.12.8, 0.12.9, 1.0.0 |
|- | |- | ||
− | | | + | |bowtie2 |
− | |0. | + | |2.0.0-beta6, 2.0.2, 2.0.5, 2.1.0 |
|- | |- | ||
− | | | + | |breseq |
− | |0. | + | |0.24 |
|- | |- | ||
− | | | + | |bwa |
− | |0. | + | |0.5.9, 0.7.5a |
|- | |- | ||
− | | | + | |cafe |
− | | | + | |2.2, 3.0 |
|- | |- | ||
− | | | + | |casava |
− | | | + | |1.8.2 |
|- | |- | ||
− | | | + | |cd-hit |
− | | | + | |4.6, 4.6.1 |
|- | |- | ||
− | | | + | |cdbfasta |
− | |0. | + | |0.99 |
|- | |- | ||
− | | | + | |cegma |
− | | | + | |v2.4.010312 |
|- | |- | ||
− | | | + | |chance |
− | |0 | + | |1.0 |
|- | |- | ||
− | | | + | |chimera |
− | | | + | |1.5.3, 1.6.2 |
|- | |- | ||
− | | | + | |cisgenome |
− | |0 | + | |2.0 |
|- | |- | ||
− | | | + | |ClonalFrame |
− | | | + | |1.2 |
|- | |- | ||
− | | | + | |clustalo |
− | | | + | |1.2.0 |
|- | |- | ||
− | | | + | |clustalw |
− | | | + | |2.1 |
|- | |- | ||
− | | | + | |cufflinks |
− | |0. | + | |1.1.0, 1.3.0, 2.0.2, 2.1.1 |
|- | |- | ||
− | | | + | |cutadapt |
− | | | + | |1.2 |
|- | |- | ||
− | | | + | |cytoscape |
− | | | + | |2.8.1, 2.8.3 |
|- | |- | ||
− | | | + | |EagleView |
− | | | + | |2.2 |
|- | |- | ||
− | | | + | |efiest |
− | | | + | |alpha, devel |
|- | |- | ||
− | | | + | |EMBOSS |
− | | | + | |6.5.7 |
|- | |- | ||
− | | | + | |erange |
− | | | + | |3.2.1 |
|- | |- | ||
− | | | + | |estscan |
− | |0. | + | |3.0.3 |
|- | |- | ||
− | | | + | |fasta |
− | | | + | |36.3.5d |
|- | |- | ||
− | | | + | |fasta_splitter |
− | | | + | |1 |
|- | |- | ||
− | | | + | |fastqc |
− | |0. | + | |0.10.1 |
|- | |- | ||
− | | | + | |fastsimcoal2 |
− | | | + | |1.1.1 |
|- | |- | ||
− | | | + | |fasttree |
− | | | + | |2.1.7 |
|- | |- | ||
− | | | + | |fastx_toolkit |
− | |0. | + | |0.0.13 |
|- | |- | ||
− | | | + | |findpeaks |
− | | | + | |3.1.9.2 |
|- | |- | ||
− | | | + | |freebayes |
− | |0. | + | |0.9.6 |
|- | |- | ||
− | | | + | |gatk |
− | | | + | |1.6-5, 1.6-13, 2.5-2, 2.6-4 |
|- | |- | ||
− | | | + | |gcc |
− | | | + | |4.8.1 |
|- | |- | ||
− | | | + | |geneid |
− | |0 | + | |1.0 |
|- | |- | ||
− | | | + | |genomer |
− | |0. | + | |0.0.10 |
|- | |- | ||
− | | | + | |genometools |
− | | | + | |1.5.1 |
|- | |- | ||
− | | | + | |gff |
− | | | + | |2.1 |
|- | |- | ||
− | | | + | |glimmer |
− | | | + | |3.02 |
|- | |- | ||
− | | | + | |gmap |
− | | | + | |2011-09-14, 2013-03-31 |
|- | |- | ||
− | | | + | |gmes |
− | | | + | |v2.3e |
|- | |- | ||
− | | | + | |gnuplot |
− | | | + | |4.6.3 |
|- | |- | ||
− | | | + | |graphviz |
− | | | + | |2.32.0 |
|- | |- | ||
− | | | + | |gsl |
− | | | + | |1.16 |
|- | |- | ||
− | | | + | |hmmer-mpi |
− | |0. | + | |2.32-MPI-0.92 |
|- | |- | ||
− | | | + | |hmmer |
− | | | + | |2.3.2, 3.0 |
|- | |- | ||
− | | | + | |htseq |
− | |0. | + | |0.5.4 |
|- | |- | ||
− | | | + | |icc |
− | | | + | |2013.5.192 |
|- | |- | ||
− | | | + | |idba-ud |
− | | | + | |1.1.0 |
|- | |- | ||
− | | | + | |IGV |
− | | | + | |2.1.24 |
|- | |- | ||
− | | | + | |IGVTools |
− | | | + | |2.1.24 |
|- | |- | ||
− | | | + | |IMAGE |
− | | | + | |2.33 |
|- | |- | ||
− | | | + | |ImageMagick |
− | | | + | |6.7.8-9 |
|- | |- | ||
− | | | + | |infernal |
− | | | + | |1.1rc1, 1.1rc2 |
|- | |- | ||
− | | | + | |inparanoid |
− | | | + | |4.1 |
|- | |- | ||
− | | | + | |iprscan |
− | | | + | |4.8, 5.44, 5.45 |
|- | |- | ||
− | | | + | |java |
− | | | + | |1.6.0_41, 1.7.0_06-i386, 1.7.0_07 |
|- | |- | ||
− | | | + | |jellyfish |
− | | | + | |1.1.6, 1.1.11 |
|- | |- | ||
− | | | + | |khmer |
− | | | + | |2013-05-06 |
|- | |- | ||
− | | | + | |kmergenie |
− | | | + | |1.5854 |
|- | |- | ||
− | | | + | |krona |
− | | | + | |2.2 |
|- | |- | ||
− | | | + | |lamarc |
− | | | + | |2.1.8 |
|- | |- | ||
− | | | + | |last |
− | | | + | |278 |
|- | |- | ||
− | | | + | |lastz |
− | | | + | |1.02.00 |
|- | |- | ||
− | | | + | |libstree |
− | |0. | + | |0.4.2 |
|- | |- | ||
− | | | + | |LR-TRIRLS |
− | | | + | |20060531 |
|- | |- | ||
− | | | + | |lua |
− | | | + | |5.1.4, 5.2.2 |
|- | |- | ||
− | | | + | |MACS |
− | |0. | + | |1.4.2, 2.0.10 |
|- | |- | ||
− | | | + | |mafft |
− | | | + | |6.953 |
|- | |- | ||
− | | | + | |matlab-runtime |
− | | | + | |r2012b |
|- | |- | ||
− | | | + | |matlab |
− | |0. | + | |7.11.0.584 |
|- | |- | ||
− | | | + | |mcl |
− | | | + | |12-068 |
|- | |- | ||
− | | | + | |MEGAN |
− | | | + | |4.70.4, 5.1.0 |
|- | |- | ||
− | | | + | |meme |
− | | | + | |4.9.0 |
|- | |- | ||
− | | | + | |MetaGeneMark |
− | | | + | |2010 |
|- | |- | ||
− | | | + | |metAMOS |
− | | | + | |1.2 |
|- | |- | ||
− | | | + | |MetaVelvet |
− | | | + | |1.2.02, 1.2.02-kmer245 |
|- | |- | ||
− | | | + | |mfinder |
− | | | + | |1.2 |
|- | |- | ||
− | | | + | |mira |
− | | | + | |3.2.1 |
|- | |- | ||
− | | | + | |MOCAT |
− | | | + | |1.1 |
|- | |- | ||
− | | | + | |ModalClust |
− | |0. | + | |0.2, 0.3 |
|- | |- | ||
− | | | + | |mothur |
− | |0. | + | |1.8, 1.28.0, 1.31.2, 1.32.0, 1.32.1 |
|- | |- | ||
− | | | + | |mpich |
− | |0. | + | |3.0.4 |
|- | |- | ||
− | | | + | |mpich2 |
− | | | + | |1.4.1p1, 1.5 |
|- | |- | ||
− | | | + | |msort |
− | |0 | + | |1.0 |
|- | |- | ||
− | | | + | |MUMmer |
− | | | + | |3.23 |
|- | |- | ||
− | | | + | |muscle |
− | | | + | |3.8.31 |
|- | |- | ||
− | | | + | |novocraft |
− | | | + | |2.08, 2.08.02, 2.08.03, 3.00.01, 3.00.02, 3.00.05, 3.02 |
|- | |- | ||
− | | | + | |oasas-kmer245 |
− | |0. | + | |0.2.8 |
|- | |- | ||
− | | | + | |oasas |
− | |0. | + | |0.2.8 |
|- | |- | ||
− | | | + | |OLB |
− | | | + | |1.9.4 |
|- | |- | ||
− | | | + | |openmpi-intel |
− | | | + | |1.6.3 |
|- | |- | ||
− | | | + | |openmpi |
− | | | + | |1.4.3, 1.6.3 |
|- | |- | ||
− | | | + | |orthomcl |
− | |0. | + | |2.0.2, 2.0.7 |
|- | |- | ||
− | | | + | |paml |
− | | | + | |4.4 |
|- | |- | ||
− | | | + | |parallel |
− | | | + | |20121122 |
|- | |- | ||
− | | | + | |pathway-tools |
− | | | + | |16.5 |
|- | |- | ||
− | | | + | |PBJelly |
− | | | + | |12.9.14 |
|- | |- | ||
− | | | + | |peaksplitter |
− | |0 | + | |1.0 |
|- | |- | ||
− | | | + | |perfsuite |
− | |0. | + | |1.0.0 |
|- | |- | ||
− | | | + | |perl |
− | | | + | |5.16.1 |
|- | |- | ||
− | | | + | |pfamscan |
− | |0 | + | |1.0 |
|- | |- | ||
− | | | + | |phred |
− | |0. | + | |0.020425.c |
|- | |- | ||
− | | | + | |phylip |
− | | | + | |3.69 |
|- | |- | ||
− | | | + | |phymmbl |
− | |0 | + | |4.0 |
|- | |- | ||
− | | | + | |picard-tools |
− | | | + | |1.34, 1.73, 1.90 |
|- | |- | ||
− | | | + | |polyphen |
− | | | + | |2.2.2 |
|- | |- | ||
− | | | + | |pplacer |
− | |0. | + | |1.0, 1.1 |
|- | |- | ||
− | | | + | |prank |
− | | | + | |121002 |
|- | |- | ||
− | | | + | |prodigal |
− | |0. | + | |2.0, 2.2 |
|- | |- | ||
− | | | + | |python |
− | | | + | |2.6.6, 2.7.3(default), 2.7.3-sqlite, 2.7.5-galaxy, 3.2.3 |
|- | |- | ||
− | | | + | |qiime |
− | |0. | + | |1.3.0, 1.5.0, 1.6.0, 1.7.0 |
|- | |- | ||
− | | | + | |quake |
− | |0. | + | |0.3.4 |
|- | |- | ||
− | | | + | |quast |
− | | | + | |2.2 |
|- | |- | ||
− | | | + | |quest |
− | | | + | |alpha, devel |
|- | |- | ||
− | | | + | |R |
− | |0. | + | |2.15.0, 2.15.1, 2.15.2, 3.0.0(default), 3.0.2 |
|- | |- | ||
− | | | + | |RAxML |
− | | | + | |7.3.0 |
|- | |- | ||
− | | | + | |ray |
− | | | + | |2.20, 2.30 |
|- | |- | ||
− | | | + | |rdp_classifier |
− | | | + | |2.5 |
|- | |- | ||
− | | | + | |rdxplorer |
− | | | + | |3.2 |
|- | |- | ||
− | | | + | |repeatmasker |
− | | | + | |3.28 |
|- | |- | ||
− | | | + | |rockhopper |
− | | | + | |1.2 |
|- | |- | ||
− | | | + | |rsa-tools |
− | | | + | |2012-10-09 |
|- | |- | ||
|rstudio | |rstudio | ||
|0.97.312 | |0.97.312 | ||
|- | |- | ||
− | | | + | |ruby |
− | | | + | |1.9.3 |
|- | |- | ||
− | | | + | |samtools |
− | |0. | + | |0.1.16 |
|- | |- | ||
− | | | + | |samtools |
− | |0. | + | |0.1.18 |
|- | |- | ||
− | | | + | |samtools |
− | |0. | + | |0.1.19 |
|- | |- | ||
− | | | + | |sam_comp |
− | |0. | + | |0.7 |
|- | |- | ||
− | | | + | |SICER |
− | | | + | |1.1 |
|- | |- | ||
− | | | + | |signalp |
− | | | + | |4.1 |
|- | |- | ||
− | | | + | |smrtanalysis |
− | | | + | |1.4.0 |
|- | |- | ||
− | | | + | |smrtanalysis |
− | |0. | + | |2.0.1 |
|- | |- | ||
− | | | + | |SnpEff |
− | | | + | |3.2 |
|- | |- | ||
− | | | + | |SnpEff |
− | | | + | |3.3e |
|- | |- | ||
− | | | + | |SOAP2 |
− | | | + | |2.2 |
|- | |- | ||
− | | | + | |SOAPdenovo-Trans |
− | | | + | |1.02 |
|- | |- | ||
− | | | + | |SOAPdenovo |
− | | | + | |2.04 |
|- | |- | ||
− | | | + | |SOAPdenovo2 |
− | | | + | |r240 |
|- | |- | ||
− | | | + | |SOAPec |
− | | | + | |2.01 |
|- | |- | ||
− | | | + | |SOAPec |
− | | | + | |2.02 |
|- | |- | ||
− | | | + | |SOAPErrorCorrection |
− | |0. | + | |0.04 |
|- | |- | ||
− | | | + | |SOAPGapCloser |
− | | | + | |1.12 |
|- | |- | ||
− | | | + | |SOAPprepare |
− | |0. | + | |0.1 |
|- | |- | ||
− | | | + | |speciateit |
− | | | + | |184(default) |
|- | |- | ||
− | | | + | |speciateit |
− | | | + | |template |
|- | |- | ||
− | | | + | |speciatetest |
− | | | + | |184 |
|- | |- | ||
− | | | + | |speciate_it |
− | | | + | |184(default) |
|- | |- | ||
− | | | + | |sratoolkit |
− | | | + | |2.1.16 |
|- | |- | ||
− | | | + | |srna-tools |
− | | | + | |20130118 |
|- | |- | ||
− | | | + | |ssaha2 |
− | | | + | |2.5.5 |
|- | |- | ||
− | | | + | |stacks |
− | |0. | + | |0.9996 |
|- | |- | ||
− | | | + | |stacks |
− | |0. | + | |0.99994 |
|- | |- | ||
− | | | + | |structure |
− | | | + | |2.3.4 |
|- | |- | ||
− | | | + | |subread |
− | | | + | |3.1.6 |
|- | |- | ||
− | | | + | |supfam |
− | | | + | |1.75 |
|- | |- | ||
− | | | + | |tabix |
− | |0. | + | |0.2.6 |
|- | |- | ||
− | | | + | |tcoffee |
− | | | + | |10-r1613 |
|- | |- | ||
− | | | + | |tmhmm |
− | |0 | + | |2.0 |
|- | |- | ||
− | | | + | |tophat |
− | | | + | |1.4.1 |
|- | |- | ||
− | | | + | |tophat2 |
− | |0. | + | |2.0.4 |
|- | |- | ||
− | | | + | |tophat2 |
− | |0. | + | |2.0.5 |
|- | |- | ||
− | | | + | |tophat2 |
− | |0. | + | |2.0.6 |
|- | |- | ||
− | | | + | |tophat2 |
− | |0. | + | |2.0.7 |
|- | |- | ||
− | | | + | |tophat2 |
− | |0. | + | |2.0.8 |
|- | |- | ||
− | | | + | |tophat2 |
− | |0. | + | |2.0.10(default) |
|- | |- | ||
− | | | + | |treemix |
− | | | + | |1.12 |
|- | |- | ||
− | | | + | |trf |
− | | | + | |4.04 |
|- | |- | ||
− | | | + | |trimmomatic |
− | |0. | + | |0.22 |
|- | |- | ||
− | | | + | |trimmomatic |
− | |0. | + | |0.27 |
|- | |- | ||
− | | | + | |trimmomatic |
− | |0. | + | |0.30 |
|- | |- | ||
− | | | + | |trinityrnaseq-intel |
− | | | + | |r2013-02-25 |
|- | |- | ||
− | | | + | |trinityrnaseq |
− | | | + | |r2012-06-08 |
|- | |- | ||
− | | | + | |trinityrnaseq |
− | | | + | |r2013-02-25 |
|- | |- | ||
− | | | + | |trinityrnaseq |
− | | | + | |r2013-08-14 |
|- | |- | ||
− | | | + | |trinotate |
− | | | + | |trinotate_r20130826 |
|- | |- | ||
− | | | + | |truesight |
− | |0. | + | |0.06 |
|- | |- | ||
− | | | + | |uchime |
− | | | + | |4.2.40 |
|- | |- | ||
− | | | + | |usearch |
− | |0. | + | |6.0.307 |
|- | |- | ||
− | | | + | |usearch |
− | | | + | |6.1.544 |
|- | |- | ||
− | | | + | |usearch |
− | |0. | + | |7.0.959 |
|- | |- | ||
− | | | + | |USeq |
− | | | + | |8.5.1 |
|- | |- | ||
− | | | + | |vcftools |
− | |0. | + | |0.1.7 |
|- | |- | ||
− | | | + | |vcftools |
− | |0. | + | |0.1.11 |
|- | |- | ||
− | | | + | |velvet-kmer245 |
− | | | + | |1.2.10 |
|- | |- | ||
− | | | + | |velvet |
− | | | + | |1.1.04 |
|- | |- | ||
− | | | + | |velvet |
− | | | + | |1.2.08 |
|- | |- | ||
− | | | + | |velvet |
− | | | + | |1.2.10 |
|- | |- | ||
− | | | + | |velvetOptimiser |
− | | | + | |2.2.5 |
|- | |- | ||
− | | | + | |wessim |
− | |0 | + | |1.0 |
|- | |- | ||
− | | | + | |wgs |
− | |0 | + | |7.0 |
|- | |- | ||
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Revision as of 00:19, 16 February 2014
Application | Version |
---|---|
454 | 2.6, 2.7, 2.8 |
AbundantOTU+ | 0.91b |
abyss | 1.2.5, 1.3.3, 1.3.4 |
afni | 2011_12_21_2014 |
allpathslg | 42911 |
amos | 3.1.0 |
AmpliconNoise | 1.2.7 |
art | 20110922 |
artemis | 14.0 |
augustus | 2.6.1 |
b2g4pipe | 2.5 |
babraham | bioinformatics |
bali-phy | 2.1.1 |
bam2fastq | 1.1.0 |
bamtools | 0.9.0 |
bcbio-nextgen | 0.6.5 |
bedtools | 2.10.0, 2.10.1, 2.17.0 |
biodatabase | 1.0 |
biopieces | 0.48 |
blast+ | 2.2.25+, 2.2.28+ |
blast-intel | 2.2.26 |
blast | 2.2.25, 2.2.26 |
blast2go | 2.5 |
blat | 0.34 |
boost-intel | 1.54 |
boost | 1.54 |
bowtie | 0.12.8, 0.12.9, 1.0.0 |
bowtie2 | 2.0.0-beta6, 2.0.2, 2.0.5, 2.1.0 |
breseq | 0.24 |
bwa | 0.5.9, 0.7.5a |
cafe | 2.2, 3.0 |
casava | 1.8.2 |
cd-hit | 4.6, 4.6.1 |
cdbfasta | 0.99 |
cegma | v2.4.010312 |
chance | 1.0 |
chimera | 1.5.3, 1.6.2 |
cisgenome | 2.0 |
ClonalFrame | 1.2 |
clustalo | 1.2.0 |
clustalw | 2.1 |
cufflinks | 1.1.0, 1.3.0, 2.0.2, 2.1.1 |
cutadapt | 1.2 |
cytoscape | 2.8.1, 2.8.3 |
EagleView | 2.2 |
efiest | alpha, devel |
EMBOSS | 6.5.7 |
erange | 3.2.1 |
estscan | 3.0.3 |
fasta | 36.3.5d |
fasta_splitter | 1 |
fastqc | 0.10.1 |
fastsimcoal2 | 1.1.1 |
fasttree | 2.1.7 |
fastx_toolkit | 0.0.13 |
findpeaks | 3.1.9.2 |
freebayes | 0.9.6 |
gatk | 1.6-5, 1.6-13, 2.5-2, 2.6-4 |
gcc | 4.8.1 |
geneid | 1.0 |
genomer | 0.0.10 |
genometools | 1.5.1 |
gff | 2.1 |
glimmer | 3.02 |
gmap | 2011-09-14, 2013-03-31 |
gmes | v2.3e |
gnuplot | 4.6.3 |
graphviz | 2.32.0 |
gsl | 1.16 |
hmmer-mpi | 2.32-MPI-0.92 |
hmmer | 2.3.2, 3.0 |
htseq | 0.5.4 |
icc | 2013.5.192 |
idba-ud | 1.1.0 |
IGV | 2.1.24 |
IGVTools | 2.1.24 |
IMAGE | 2.33 |
ImageMagick | 6.7.8-9 |
infernal | 1.1rc1, 1.1rc2 |
inparanoid | 4.1 |
iprscan | 4.8, 5.44, 5.45 |
java | 1.6.0_41, 1.7.0_06-i386, 1.7.0_07 |
jellyfish | 1.1.6, 1.1.11 |
khmer | 2013-05-06 |
kmergenie | 1.5854 |
krona | 2.2 |
lamarc | 2.1.8 |
last | 278 |
lastz | 1.02.00 |
libstree | 0.4.2 |
LR-TRIRLS | 20060531 |
lua | 5.1.4, 5.2.2 |
MACS | 1.4.2, 2.0.10 |
mafft | 6.953 |
matlab-runtime | r2012b |
matlab | 7.11.0.584 |
mcl | 12-068 |
MEGAN | 4.70.4, 5.1.0 |
meme | 4.9.0 |
MetaGeneMark | 2010 |
metAMOS | 1.2 |
MetaVelvet | 1.2.02, 1.2.02-kmer245 |
mfinder | 1.2 |
mira | 3.2.1 |
MOCAT | 1.1 |
ModalClust | 0.2, 0.3 |
mothur | 1.8, 1.28.0, 1.31.2, 1.32.0, 1.32.1 |
mpich | 3.0.4 |
mpich2 | 1.4.1p1, 1.5 |
msort | 1.0 |
MUMmer | 3.23 |
muscle | 3.8.31 |
novocraft | 2.08, 2.08.02, 2.08.03, 3.00.01, 3.00.02, 3.00.05, 3.02 |
oasas-kmer245 | 0.2.8 |
oasas | 0.2.8 |
OLB | 1.9.4 |
openmpi-intel | 1.6.3 |
openmpi | 1.4.3, 1.6.3 |
orthomcl | 2.0.2, 2.0.7 |
paml | 4.4 |
parallel | 20121122 |
pathway-tools | 16.5 |
PBJelly | 12.9.14 |
peaksplitter | 1.0 |
perfsuite | 1.0.0 |
perl | 5.16.1 |
pfamscan | 1.0 |
phred | 0.020425.c |
phylip | 3.69 |
phymmbl | 4.0 |
picard-tools | 1.34, 1.73, 1.90 |
polyphen | 2.2.2 |
pplacer | 1.0, 1.1 |
prank | 121002 |
prodigal | 2.0, 2.2 |
python | 2.6.6, 2.7.3(default), 2.7.3-sqlite, 2.7.5-galaxy, 3.2.3 |
qiime | 1.3.0, 1.5.0, 1.6.0, 1.7.0 |
quake | 0.3.4 |
quast | 2.2 |
quest | alpha, devel |
R | 2.15.0, 2.15.1, 2.15.2, 3.0.0(default), 3.0.2 |
RAxML | 7.3.0 |
ray | 2.20, 2.30 |
rdp_classifier | 2.5 |
rdxplorer | 3.2 |
repeatmasker | 3.28 |
rockhopper | 1.2 |
rsa-tools | 2012-10-09 |
rstudio | 0.97.312 |
ruby | 1.9.3 |
samtools | 0.1.16 |
samtools | 0.1.18 |
samtools | 0.1.19 |
sam_comp | 0.7 |
SICER | 1.1 |
signalp | 4.1 |
smrtanalysis | 1.4.0 |
smrtanalysis | 2.0.1 |
SnpEff | 3.2 |
SnpEff | 3.3e |
SOAP2 | 2.2 |
SOAPdenovo-Trans | 1.02 |
SOAPdenovo | 2.04 |
SOAPdenovo2 | r240 |
SOAPec | 2.01 |
SOAPec | 2.02 |
SOAPErrorCorrection | 0.04 |
SOAPGapCloser | 1.12 |
SOAPprepare | 0.1 |
speciateit | 184(default) |
speciateit | template |
speciatetest | 184 |
speciate_it | 184(default) |
sratoolkit | 2.1.16 |
srna-tools | 20130118 |
ssaha2 | 2.5.5 |
stacks | 0.9996 |
stacks | 0.99994 |
structure | 2.3.4 |
subread | 3.1.6 |
supfam | 1.75 |
tabix | 0.2.6 |
tcoffee | 10-r1613 |
tmhmm | 2.0 |
tophat | 1.4.1 |
tophat2 | 2.0.4 |
tophat2 | 2.0.5 |
tophat2 | 2.0.6 |
tophat2 | 2.0.7 |
tophat2 | 2.0.8 |
tophat2 | 2.0.10(default) |
treemix | 1.12 |
trf | 4.04 |
trimmomatic | 0.22 |
trimmomatic | 0.27 |
trimmomatic | 0.30 |
trinityrnaseq-intel | r2013-02-25 |
trinityrnaseq | r2012-06-08 |
trinityrnaseq | r2013-02-25 |
trinityrnaseq | r2013-08-14 |
trinotate | trinotate_r20130826 |
truesight | 0.06 |
uchime | 4.2.40 |
usearch | 6.0.307 |
usearch | 6.1.544 |
usearch | 7.0.959 |
USeq | 8.5.1 |
vcftools | 0.1.7 |
vcftools | 0.1.11 |
velvet-kmer245 | 1.2.10 |
velvet | 1.1.04 |
velvet | 1.2.08 |
velvet | 1.2.10 |
velvetOptimiser | 2.2.5 |
wessim | 1.0 |
wgs | 7.0 |
wise | 2.2.3-rc7 |