Difference between revisions of "Single Cell Scheduler"

From Carl R. Woese Institute for Genomic Biology - University of Illinois Urbana-Champaign
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=== Contact Information ===
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=== DNA Services 10x Website ===
*All inquiries about 10x Single Cell should be directed to [mailto:ngsequencing@illinois.edu ngsequencing@illinois.edu].
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*For more information, please visit the 10x website at this link: https://biotech.illinois.edu/htdna/applications/10x-submission
  
==Scheduling Meetings, Test Counts, and Experiments==
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===Instructions for Scheduling Test Counts===
10x Single Cell Scheduler - <span class="newwindow">https://www-app.igb.illinois.edu/singlecell/</span>
 
  
====Gaining Access to Online Scheduler====
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*You can access the scheduler at this link: https://www-app.igb.illinois.edu/singlecell/
Email this form ([https://help.igb.illinois.edu/images/0/01/10x_Single_Cell_Scheduler_Access_Form.docx 10x_Single_Cell_Scheduler_Access_Form]) to [mailto:ngsequencing@illinois.edu ngsequencing@illinois.edu].  You will receive an email when you have access to login to the scheduler.  This scheduler is only used to schedule BL1 test counts.  Anything else must be scheduled by contacting [mailto:ngsequencing@illinois.edu ngsequencing@illinois.edu].
 
  
===Scheduling an Initial Meeting===
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* Login to the scheduler using your netID and AD password.
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[[File:Singlecell1.jpg|500px]]
  
* To schedule an inital meeting, please contact [mailto:ngsequencing@illinois.edu ngsequencing@illinois.edu]
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* Next to "Test Run", click on the time you would like to schedule a test count.  Note that if you have not been trained on using the counter, you need to contact the DNA Services facility to schedule an assisted test count.  Please email them at [mailto:ngsequencing@illinois.edu ngsequencing@illinois.edu].
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[[file:singlecell6.jpg|600px]]
  
 
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* A box will pop up to make your reservation.  Enter the following information:
===Scheduling Test Counts===
 
 
 
* There is no charge to run test counts.
 
* Any new cell type should have at least one successful test count prior to the full experiment.
 
* Plan your test counts!  Test count and full experiments must be scheduled 1 week in advance.  The calendar will not allow you to schedule within 7 days of present time.
 
* Make sure you schedule the appropriate amount of time for the number of samples you have.
 
** 1-2 samples - 1 hour
 
** 3-4 samples - 1 hour and 30 minutes
 
** 4+ samples - 2 hours
 
* Test counts for BL1 are performed in ERML 221.
 
<big>* '''If your samples are BL2, you MUST contact [mailto:ngsequencing@illinois.edu ngsequencing@illinois.edu] to schedule test counts!!'''</big>
 
** Login to the scheduler using your netID and AD password.
 
** [[File:Singlecell1.jpg|500px]]
 
 
 
** Next to "Test Run", click on the time you would like to schedule a meeting.
 
** [[file:singlecell6.jpg|800px]]
 
 
 
** A box will pop up to make your reservation.  Enter the following information:
 
 
*** Verify the date and time of your meeting
 
*** Verify the date and time of your meeting
 
*** Under "Title of reservation", enter your first and last name.
 
*** Under "Title of reservation", enter your first and last name.
 
*** Under "Description of reservation", enter any additional comments you believe are needed.
 
*** Under "Description of reservation", enter any additional comments you believe are needed.
*** Under "Number of Samples", enter the number of samples you will be using (you can have a maximum of 16 for one experiment).
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***Check the box for BL1 samples. '''BL2 samples cannot be scheduled here. Contact [mailto:ngsequencing@illinois.edu ngsequencing@illinois.edu] to schedule BL2'''
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*** Under "Number of Samples", enter the number of samples you will be using.
 
*** Click "Create"
 
*** Click "Create"
** [[File:singlecell7.jpg|600px]]
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[[File:Testrun2.png|600px]]
 
 
** You will receive confirmation of your reservation and should be able to see it on the calendar now.
 
** [[File:singlecell8.jpg|800px]]
 
  
===Scheduling the Experiment===
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* You will receive confirmation of your reservation and should be able to see it on the calendar now.
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[[File:singlecell8.jpg|600px]]
  
* Contact [mailto:ngsequencing@illinois.edu ngsequencing@illinois.edu] to schedule your experiment.
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*Please note, your reservation is for the Cell Counter in '''334 ERML'''

Latest revision as of 11:19, 11 January 2021

DNA Services 10x Website[edit]

Instructions for Scheduling Test Counts[edit]

  • Login to the scheduler using your netID and AD password.

Singlecell1.jpg

  • Next to "Test Run", click on the time you would like to schedule a test count. Note that if you have not been trained on using the counter, you need to contact the DNA Services facility to schedule an assisted test count. Please email them at ngsequencing@illinois.edu.

Singlecell6.jpg

  • A box will pop up to make your reservation. Enter the following information:
      • Verify the date and time of your meeting
      • Under "Title of reservation", enter your first and last name.
      • Under "Description of reservation", enter any additional comments you believe are needed.
      • Check the box for BL1 samples. BL2 samples cannot be scheduled here. Contact ngsequencing@illinois.edu to schedule BL2
      • Under "Number of Samples", enter the number of samples you will be using.
      • Click "Create"

Testrun2.png

  • You will receive confirmation of your reservation and should be able to see it on the calendar now.

Singlecell8.jpg

  • Please note, your reservation is for the Cell Counter in 334 ERML