Difference between revisions of "Biocluster Mirrors"
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| − | {| style= | + | {| style='margin: 0 auto' class='wikitable' border='1' cellpadding='1' cellspacing='1' |
|- | |- | ||
| − | ! | + | !Application |
| − | ! | + | !Installed Versions |
| − | ! Description | + | !Description |
| − | |||
| − | |||
|- | |- | ||
| − | + | |[https://card.mcmaster.ca card-prevalence] | |
| − | | [ | + | |3.0.6 |
| + | |November 2019 release - 85 pathogens, 116914 resistomes, and 182532 AMR allele sequences based on sequence data acquired from NCBI on July 31, 2019, analyzed using RGI 5.0.0 (DIAMOND homolog detection) and CARD 3.0.7. Includes pre-compiled k-mer classifier data for pathogen-of-origin prediction. | ||
| + | |- | ||
| + | |[http://huttenhower.sph.harvard.edu/humann2 chocophlan] | ||
| + | |0.1.1 | ||
| | | | ||
| − | |||
| − | |||
|- | |- | ||
| − | + | |[http://www.molgen.ua.ac.be/bioinfo/projects/clusterblast/clusterblast.htm clusterblast] | |
| − | | [http:// | + | |20170105 |
| | | | ||
| − | |||
| − | |||
|- | |- | ||
| − | | | + | |[https://www.ebi.ac.uk/ena ena] |
| − | | [[ | + | |Release_130 |
| + | |The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. | ||
| + | |- | ||
| + | |[https://software.broadinstitute.org/gatk/download/bundle gatkbundle] | ||
| + | |20191118 | ||
| + | |he GATK resource bundle is a collection of standard files for working with human resequencing data with the GATK. We provide several versions of the bundle corresponding to the various reference builds, | ||
| + | |- | ||
| + | |[https://www.ncbi.nlm.nih.gov/genbank/ genbank] | ||
| + | |238 | ||
| + | |GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences | ||
| + | |- | ||
| + | |[https://www.ebi.ac.uk/interpro/ interpro] | ||
| + | |68.0 | ||
| + | |InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites. | ||
| + | |- | ||
| + | |[ftp://ftp.ncbi.nlm.nih.gov/blast/db/ ncbi-blastdb] | ||
| + | |20170702<br>20180404<br>20190320<br>20190808 | ||
| | | | ||
| − | |||
| − | |||
|- | |- | ||
| − | | | + | |[https://pfam.xfam.org/ pfam] |
| − | + | |32.0 | |
| − | | | + | |The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs) |
| − | | | + | |- |
| − | + | |[https://www.uniprot.org/ uniprot] | |
| + | |2018_04 | ||
| + | |The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information. | ||
|} | |} | ||
Revision as of 12:11, 9 December 2020
| Application | Installed Versions | Description |
|---|---|---|
| card-prevalence | 3.0.6 | November 2019 release - 85 pathogens, 116914 resistomes, and 182532 AMR allele sequences based on sequence data acquired from NCBI on July 31, 2019, analyzed using RGI 5.0.0 (DIAMOND homolog detection) and CARD 3.0.7. Includes pre-compiled k-mer classifier data for pathogen-of-origin prediction. |
| chocophlan | 0.1.1 | |
| clusterblast | 20170105 | |
| ena | Release_130 | The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. |
| gatkbundle | 20191118 | he GATK resource bundle is a collection of standard files for working with human resequencing data with the GATK. We provide several versions of the bundle corresponding to the various reference builds, |
| genbank | 238 | GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences |
| interpro | 68.0 | InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites. |
| ncbi-blastdb | 20170702 20180404 20190320 20190808 |
|
| pfam | 32.0 | The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs) |
| uniprot | 2018_04 | The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information. |
