View source for Biocluster Jupyter

__TOC__
= Jupyter =
* There is an installation of Jupyter which is accessible at [https://bioapps.igb.illinois.edu/jupyter https://bioapps.igb.illinois.edu/jupyter]

= Custom Conda Environment =
* From Regular Command Line
* Load Anaconda Module
<pre>
module load Anaconda3
</pre>
* Create Conda Environment
<pre>
conda create --name testenv -p $HOME/testenv
</pre>
* Activate Conda Environment
<pre>
conda activate $HOME/testenv
</pre>
* Install ipython conda package
<pre>
conda install ipykernel
</pre>
* Install custom ipykernel module.  This will install the kernel file into $HOME/.local/share/jupyter/kernels.  This can be seen by jupyterhub
<pre>
ipython kernel install --user --name='testenv'
</pre>
* Open Jupyterhub at [https://bioapps.igb.illinois.edu/jupyter https://bioapps.igb.illinois.edu/jupyter] and start a server.
* Your '''testenv''' kernel should be listed in the list of kernels